·In 2010 blue crabs in the northern Gulf of Mexico were exposed to crude oil and chemical dispersants from the Deepwater Horizon oil spill.To characterize the blue crab transcriptome and identify genes that respond to oil exposure we sequenced transcriptomes from hepatopancreas and gill tissues of juvenile blue crabs exposed to a water-accommodated fraction of surrogate MacondoAuthor Yunsheng Wang,Muhammad Qasim Shahid,Fozia Ghouri,Faheem Shehzad BalochPublish Year 2020De novo transcriptome assembly and data for the blue Jun 01,2020·De novo transcriptome assembly was completed using Trinity with default options and requiring a minimum contig length of 200 nt.Clustering of similar transcripts was performed using CD-HIT-EST [8,9] and transcript were quality filtered using TransRate .This filtered transcriptome contained 571,105 transcripts associated with 449,956 unigenes.Cited by 16Publish Year 2015Author Bree K.Yednock,Timothy J.Sullivan,Joseph E.NeigelDe novo assembly of a transcriptome from juvenile blue In another recent study,Yednock et al.(2015) reported the de novo assembly of the blue crab transcriptome,which identified thousands of genes with functions (gene
Jul 11,2015·Yednock,B.K.,Sullivan,T.J. Neigel,J.E.De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus) following exposure to surrogate Macondo crude oil.BMC Genomics 16,521 (2015).https://doi/10.1186/s12864-015-1739-2.Download citation.Received 13 January 2015.Accepted 29 June 2015Cited by 58Publish Year 2018Author Madeleine Carruthers,Andrey A.Yurchenko,Julian J.Augley,Colin E.Adams,Pawel Herzyk,Kathryn RDe Novo Assembly and Annotation of the Juvenile Tuber Jul 06,2020·Gastrodia elata is a traditional Chinese herbal medicine with good therapeutic effect on various nervous and cerebrovascular diseases.In the present study,we generated 20,611,556 raw reads from the young tuber transcriptome of a G.elata hybrid (Gastrodia elata BI.f.elata × Gastrodia elata BI.f.pilifera) by using Illumina HiSeq 4000 sequencing platform.De novo assembly and De novo assembly of a transcriptome from juvenile blue ·Improved de novo assembly methods enable robust generation of a reference transcriptome and offer an important alternative to genome reference mapping [28,29,30].Thus data generated as part of small-scale projects,such as the four species transcriptome resources presented in the current study,provide a valuable contribution to the
De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus) following exposure to surrogate Macondo crude oil Bree K.Yednock ,Timothy J.Sullivan ,and Joseph E.Neigel South Slough National Estuarine Research Reserve,Charleston,OR USADe novo assembly of a transcriptome from juvenile blue De novo assembly of a transcriptome from juvenile blue crabs (Callinectes sapidus)following exposure to surrogate Macondo crude oil Bree K.Yednock1*,Timothy J.Sullivan2 and Joseph E.Neigel2 Abstract Background The blue crab,Callinectes sapidus,is economically and ecologically important in western Atlantic and Gulf of Mexico coastal estuaries.Some results are removed in response to a notice of local law requirement.For more information,please see here.12345Next
Apr 09,2019·Transcriptome Assembly - Geoduck Tissue-specific Assembly Juvenile Ambient OA EPI123 with HiSeq Data on Mox by Sam White April 9,2019 2 min read Ran a de novo assembly on our HiSeq data from Hollies juvenile EPI 123 sample ambient OA .Transcriptome Assembly - Geoduck Tissue-specific Assembly Apr 09,2019·Transcriptome Assembly - Geoduck Tissue-specific Assembly Juvenile Ambient OA EPI124 with HiSeq and NovaSeq Data on Mox by Sam White April 9,2019 2 min read Ran a de novo assembly on our HiSeq and NovaSeq data from Hollies juvenile EPI 124 sample ambient OA .